Contact information
_______________________
5th floor office, room B501a
Tel: +358 2941 25269
1st floor office, room B117a
Tel: +358 2941 25271
Biomedicum Helsinki
PO Box 63 (Haartmaninkatu 8)
FI-00014 University of Helsinki
Finland
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Imaging workstation 3
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- Location: B501 lobby, 5th floor.
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Technical Information
Computer
HP Z840 workstation, Windows 10 64 bit, Intel Xeon processor, 256 GB RAM and NVidia Quadro M4000 graphics card.
Imaging Workstation user mailing list
When you make your first reservation for a BIU Imaging Workstation, you will be automatically added to the Imaging Workstation users mailing list. Please read those e-mails to know what is going on!
Software use
When you want to use a Imaging Workstation, please make a reservation in the online reservation system (Scheduler) and mark in the Event field which software you are going to use. This will let BIU follow which software is being used and which is not.
| Software |
Purpose |
Examples / Comments |
| Imaris by Bitplane |
3D and 4D data visualization and analysis |
- 4D surface rendering software
- additional modules include measurement, tracking, colocalization analysis and filament analysis.
- interacts with both Fiji and Matlab via the ImarisXT module |
| Huygens Professional by Scientific Volume Imaging |
3D and 4D data deconvolution |
- Deconvolution of microscopic images
- additional modules for extensive data visualization and analysis
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| Fiji |
Image processing and analysis |
- freeware
- based on ImageJ (main site)
- lots of downloadable plug-ins |
| CellProfiler |
Image processing and analysis |
- open source freeware
- particularly in high-content experiments
- contains ilastik interactive image classification, segmentation and analysis tool |
| Mathworks Matlab |
Multi purpose matrix calculator - also image processing and analysis |
- Programmable language |
| Leica Application Suite X (LAS X) by Leica Microsuystems |
Browsing and processing of images taken with the Leica SP8 confocals |
- Full LAS X version
- showing experiment settings
- creating 3D-projections
- exporting images to other formats
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| NIS-Elements AR by Nikon |
Browsing images taken with Nikon equipment |
- opening and manipulating images taken with Nikon widefield microscopes
- opening and manipulating images taken with Nikon TIRF/STORM microscope
- full version of software
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| Zen Digital Imaging by Carl Zeiss |
Browsing images taken with Zeiss equipment |
- opening and maipulating images taken with Zeiss confocal and widefield microscopes
-free ZEN lite version |
Page updated
30.10.2017
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