| Software |
Purpose |
Examples / Comments |
| DiscoveryToolbox by Cellomics |
Analysis of high content screening (ArrayScan) data. Includes CellSpace |
- disc-based (virtual) scanning
- ArrayScan data analysis
- data mining |
| DecisionSite 9.1.1by Spotfire |
Data analysis using interactive data visualization |
- advanced analysis of ArrayScan data |
| Igor Pro 5 by Wavemetrics |
Scientific graphing, data analysis, image processing and programming software tool |
- "Single click" FRAP analysis with macro |
| Image-Pro Plus 7.0 by MediaCybernetics |
Image processing and analysis |
- counting and measuring objects
- extracting and merging color channels |
Adobe Creative Suite CS4 includes:
Photoshop CS4 (bitmap image editor)
Illustrator CS4 (vector image editor)
InDesign CS4 (desktop publishing)
Acrobat 9 Pro (PDF editor) |
Image processing, desktop publishing (including .pdf-files) |
- adjusting image resolution, orientation, brightness, contrast and color balance
- editing color channels
- editing images using layers
- histogram operations
- a series of commands can be recorded and then automatically executed to many images
- editing articles and posters |
| MBF ImageJ 1.43b |
Image processing and analysis |
- freeware (main site)
- lots of downloadable plug-ins |
| WCIF ImageJ 1.42q |
Image processing and analysis |
- freeware (main site)
- lots of downloadable plug-ins |
| LSM Image Browser 4.2 by Zeiss |
Browsing LSM files (images taken with Zeiss confocal microscope)
Limited free version |
- freeware
- opening LSM databases, LSM files and TIFF-series
- showing experiment settings
- creating 3D-projections
- exporting images to other formats |
| AxioVision LE 4.7.2 by Zeiss |
Browsing and simple editing ZVI files (images taken with AxioVision) |
- freeware
- adding text and scale bars
- measuring length, outline and angle
- exporting images to other formats
- now includes High Dynamic Range Acquistion module |
| HistoQuant by 3DHistech |
quantification module for whole slide images scanned with 3DHistech slide scanners |
-scanners at GBU, 3rd floor and at FIMM
|
| Mathworks Matlab 2009a |
Multi purpose matrix calculator - also image processing and analysis |
- Programmable language
- Existing BIU analysis programs can be used |
| IrfanView 4.2.5 by Irfan Skiljan |
browsing, converting and editing various image formats |
- freeware
- batchprocess of images (convert, resize etc...) |
| XnView 1.96.1 by Pierre Gougelet |
browsing, converting and editing various image formats |
- freeware
- reads more than 400 different file formats |
| Living Image 3.1 |
Imaging software for the IVIS |
- Browsing and adjusting images
- Using Regions Of interest (ROI)
- Image math (eg. subtracting autofluoresence)
|
| BioImage XD |
Free open source software for analysis and visualization of multidimensional biomedical images |
- Image Viewing
- Image processing
- 3D volume rendering
- Movie making
- Colocalisation analysis |
| Fiji |
Image processing and analysis |
- freeware
- based on ImageJ (main site)
- lots of downloadable plug-ins |
| Volocity (free version) |
3D-imaging |
- limited demo version of the Volocity core |
